BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB032A02LP1|AL429493
(870 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1088 754 0.0
3x_Contig469 500 e-141
>3x_Contig1088
Length = 4585
Score = 754 bits (380), Expect = 0.0
Identities = 387/390 (99%)
Strand = Plus / Minus
Query: 1 gatcttgcaataggaatgaggtaccatgaccgattaatgcatctctttccatttcaccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gatcttgcaataggaatgaggtaccatgaccgattaatgcatctctttccatttcaccta 332
Query: 61 cacgaataccaccgtgtctctttctacccttgacaggttgcatcgttagactgttgacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cacgaataccaccgtgtctctttctacccttgacaggttgcatcgttagactgttgacag 272
Query: 121 gaccagtggaacgcacttggaacttatcgttaaccatgtgacgcaatctttgatagtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaccagtggaacgcacttggaacttatcgttaaccatgtgacgcaatctttgatagtaaa 212
Query: 181 caacaccaatgtagatatccgctctaagttcttcaccagttgcaccggagtacattggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 caacaccaatgtagatatccgctctaagttcttcaccagttgcaccggagtacattggtt 152
Query: 241 cgttaccgtggtagttgtwacctgcttttgctagttgatcaccgaagtagtcagcggggg 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cgttaccgtggtagttgtaacctgcttttgctagttgatcaccgaagtagtcagcggggg 92
Query: 301 tgtcactctcgttgaaagtccatggagtagaatcttgagcaataccatgcaatgcacctg 360
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 91 tgtcactctcgttgaaagtccatggaaaagaatcttgagcaataccatgcaatgcacctg 32
Query: 361 ctttaccagcaagagattcgacaaacatac 390
||||||||||||||||||||||||||||||
Sbjct: 31 ctttaccagcaagagattcgacaaacatac 2
>3x_Contig469
Length = 1772
Score = 500 bits (252), Expect = e-141
Identities = 260/262 (99%), Gaps = 1/262 (0%)
Strand = Plus / Minus
Query: 609 attaatttaacttcctcgatatatgcaggttcagaagagtggtaagttttgatcttcgtt 668
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 attaatttaacttcctcg-tatatgcaggttcagaagagtggtaagttttgatcttcgtt 1713
Query: 669 ttattcaaggtgtcatcaaagtatgcacaaattggatcaccttcttcaacgtaggtacct 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 ttattcaaggtgtcatcaaagtatgcacaaattggatcaccttcttcaacgtaggtacct 1653
Query: 729 atcagtggtaaaccatcgtcgtcaagcttttcaagccattccttgggccactcgtctgtw 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 atcagtggtaaaccatcgtcgtcaagcttttcaagccattccttgggccactcgtctgta 1593
Query: 789 ccgaatccgaaatgctgggtaattggatcaccacggcttctgttcatagacaaattgacc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 ccgaatccgaaatgctgggtaattggatcaccacggcttctgttcatagacaaattgacc 1533
Query: 849 ttttccaccttatacattgtac 870
||||||||||||||||||||||
Sbjct: 1532 ttttccaccttatacattgtac 1511
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5581
Number of Sequences: 1807
Number of extensions: 5581
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 870
length of database: 10,358,551
effective HSP length: 16
effective length of query: 854
effective length of database: 10,329,639
effective search space: 8821511706
effective search space used: 8821511706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)